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Hasindu Gamaarachchi [C]

Dr Hasindu Gamaarachchi

Role
Visiting Scientist
Lab/Group
Genomic Technologies Lab

Dr Hasindu Gamaarachchi completed his bachelor’s degree with first-class honours for Computer Engineering from the University of Peradeniya, Sri Lanka in 2015, where he received the award for best performance in Engineering. He has served as a lecturer at the Department of Computer Engineering and a resource person at NVIDIA research centre at the University of Peradeniya. Hasindu completed his PhD in Computer Science and Engineering at UNSW Sydney under the supervision of Professor Sri Parameswaran, Dr Aleksandar Ignjatovic and Dr Martin A. Smith, in 2020. Hasindu has also been a visiting researcher at the Garvan Institute of Medical Research during his PhD. His PhD research has won multiple awards including third place in the Association for Computing Machinery Student Research Competition (ACM SRC) 2020, globally amongst the shortlisted competitors from over 20 major ACM conferences.

Currently, Hasindu is working as a Genomics Computing Research Scientist in the Genomic Technologies Group. His work is primarily focused on design, development, optimisation and maintenance of bioinformatics software for real-time third-generation sequencing data analysis and prototyping novel domain-specific computer systems for efficient genomics data analysis.

Awards

  • 2021Dean's Award for Outstanding PhD Theses awarded by UNSW Sydney
  • 2021Outstanding PhD Thesis award by Australian Bioinformatics And Computational Biology Society (ABACBS)
  • 2020Grand finalist (third place winner) in the Association for Computing Machinery Student Research Competition (ACM SRC) [https://src.acm.org/grand-finalists/2020]
  • 2019Best poster award in Australasian Genomic Technologies Association (AGTA) Conference
  • 2019First place in the Association for Computing Machinery Special Interest Group on Embedded Systems Student Research Competition (ACM SIGBED SRC) at Embedded Systems Week Conference [https://sigbed.org/2019/10/28/sigbed_src/]
  • 2016Best presenter award in Present Around The World 2016 organised by Institution of Engineering and Technology-Young Professionals Section (IET-YPS) Sri Lanka
  • 2016Best technical paper award in Annual Technical Conference of Institution of Engineering and Technology-Young Professionals Section (IET-YPS) Sri Lanka
  • 2016C.A. Hewavitharana Prize awarded by University of Peradeniya for best performance in Engineering
  • 2016Industrial and Financial Systems (IFS) Gold Medal awarded by University of Peradeniya for best perfrmance in Computer Engineering

Education

  • 2015Bachelor of Science (Bachelor of Science (B.S)), Computer EngineeringUniversity of Peradeniya, Sri Lanka
  • 2020Doctor of Philosophy (Doctor of Philosophy (Ph.D)), Computer EngineeringUniversity of New South Wales, Australia

Selected publications

See all publications
  • 2024
    Nature Communications10.1038/s41467-024-53151-2

    Author Correction: A CCG expansion in ABCD3 causes oculopharyngodistal myopathy in individuals of European ancestry.

    Andrea Cortese, Sarah J Beecroft, Stefano Facchini, Riccardo Curro, Macarena Cabrera-Serrano, Igor Stevanovski, Sanjog R Chintalaphani, Hasindu Gamaarachchi, Ben Weisburd, Chiara Folland, Gavin Monahan, Carolin K Scriba, Lein Dofash, Mridul Johari, Bianca R Grosz, Melina Ellis, Liam G Fearnley, Rick Tankard, Justin Read, Ashirwad Merve, Natalia Dominik, Elisa Vegezzi, Ricardo P Schnekenberg, Gorka Fernandez-Eulate, Marion Masingue, Diane Giovannini, Martin B Delatycki, Elsdon Storey, Mac Gardner, David J Amor, Garth Nicholson, Steve Vucic, Robert D Henderson, Thomas Robertson, Jason Dyke, Vicki Fabian, Frank Mastaglia, Mark R Davis, Marina Kennerson, , Ros Quinlivan, Simon Hammans, Arianna Tucci, Melanie Bahlo, Catriona A McLean, Nigel G Laing, Tanya Stojkovic, Henry Houlden, Michael G Hanna, Ira W Deveson, Paul J Lockhart, Phillipa J Lamont, Michael C Fahey, Enrico Bugiardini, Gianina Ravenscroft
  • 2024
    Bioinformatics (Oxford, England)10.1093/bioinformatics/btae501

    Interactive visualization of nanopore sequencing signal data with Squigualiser.

    Hiruna Samarakoon, Kisaru Liyanage, James M Ferguson, Sri Parameswaran, Hasindu Gamaarachchi, Ira W Deveson
  • 2024
    Nature Communications10.1038/s41467-024-49950-2

    A CCG expansion in ABCD3 causes oculopharyngodistal myopathy in individuals of European ancestry.

    Andrea Cortese, Sarah J Beecroft, Stefano Facchini, Riccardo Curro, Macarena Cabrera-Serrano, Igor Stevanovski, Sanjog R Chintalaphani, Hasindu Gamaarachchi, Ben Weisburd, Chiara Folland, Gavin Monahan, Carolin K Scriba, Lein Dofash, Mridul Johari, Bianca R Grosz, Melina Ellis, Liam G Fearnley, Rick Tankard, Justin Read, Ashirwad Merve, Natalia Dominik, Elisa Vegezzi, Ricardo P Schnekenberg, Gorka Fernandez-Eulate, Marion Masingue, Diane Giovannini, Martin B Delatycki, Elsdon Storey, Mac Gardner, David J Amor, Garth Nicholson, Steve Vucic, Robert D Henderson, Thomas Robertson, Jason Dyke, Vicki Fabian, Frank Mastaglia, Mark R Davis, Marina Kennerson, , Ros Quinlivan, Simon Hammans, Arianna Tucci, Melanie Bahlo, Catriona A McLean, Nigel G Laing, Tanya Stojkovic, Henry Houlden, Michael G Hanna, Ira W Deveson, Paul J Lockhart, Phillipa J Lamont, Michael C Fahey, Enrico Bugiardini, Gianina Ravenscroft
  • 2024
    Genome Research10.1101/gr.278730.123

    Simulation of nanopore sequencing signal data with tunable parameters.

    Hasindu Gamaarachchi, James M Ferguson, Hiruna Samarakoon, Kisaru Liyanage, Ira W Deveson
  • 2024
    Nature Communications10.1038/s41467-024-46085-2

    Extensive DNA methylome rearrangement during early lamprey embryogenesis.

    Allegra Angeloni, Skye Fissette, Deniz Kaya, Jillian M Hammond, Hasindu Gamaarachchi, Ira W Deveson, Robert J Klose, Weiming Li, Xiaotian Zhang, Ozren Bogdanovic